Commit Graph

236 Commits

Author SHA1 Message Date
Mondo Diaz
97b39d000b Add security fixes and code cleanup for PyPI cache
- Add require_admin authentication to cache management endpoints
- Add limit validation (1-500) on failed tasks query
- Add thread lock for worker pool thread safety
- Fix exception handling with separate recovery DB session
- Remove obsolete design doc
2026-02-02 11:37:25 -06:00
Mondo Diaz
ba708332a5 Add Background Jobs dashboard for admin users
New admin page at /admin/jobs showing:
- PyPI cache job status (pending, in-progress, completed, failed)
- Failed task list with error details
- Retry individual packages or retry all failed
- Auto-refresh every 5 seconds (toggleable)
- Placeholder for future NPM cache jobs

Accessible from admin dropdown menu as "Background Jobs".
2026-02-02 11:26:55 -06:00
Mondo Diaz
d274f3f375 Add robust PyPI dependency caching with task queue
Replace unbounded thread spawning with managed worker pool:
- New pypi_cache_tasks table tracks caching jobs
- Thread pool with 5 workers (configurable via ORCHARD_PYPI_CACHE_WORKERS)
- Automatic retries with exponential backoff (30s, 60s, then fail)
- Deduplication to prevent duplicate caching attempts

New API endpoints for visibility and control:
- GET /pypi/cache/status - queue health summary
- GET /pypi/cache/failed - list failed tasks with errors
- POST /pypi/cache/retry/{package} - retry single package
- POST /pypi/cache/retry-all - retry all failed packages

This fixes silent failures in background dependency caching where
packages would fail to cache without any tracking or retry mechanism.
2026-02-02 11:16:02 -06:00
Mondo Diaz
490b05438d Add design doc for PyPI cache robustness improvements 2026-02-02 11:06:51 -06:00
Mondo Diaz
3c2ab70ef0 Fix proactive dependency caching HTTPS redirect issue
When background threads fetch from our own proxy using the request's
base_url, it returns http:// but ingress requires https://. The 308
redirect was dropping trailing slashes, causing requests to hit the
frontend catch-all route instead of /pypi/simple/.

Force HTTPS explicitly in the background caching function to avoid
the redirect entirely.
2026-01-30 18:59:31 -06:00
Mondo Diaz
109a593f83 Add debug logging for proactive caching regex failures 2026-01-30 18:43:09 -06:00
Mondo Diaz
1d727b3f8c Fix proactive caching regex to match both hyphens and underscores
PEP 503 normalizes package names to use hyphens, but wheel filenames
may use underscores (e.g., typing_extensions-4.0.0-py3-none-any.whl).

Convert the search pattern to match either separator.
2026-01-30 18:25:30 -06:00
Mondo Diaz
47aa0afe91 Fix proactive caching failing on HTTP->HTTPS redirects
The background dependency caching was getting 308 redirects because
request.base_url returns http:// but the ingress redirects to https://.

Enable follow_redirects=True in httpx client to handle this.
2026-01-30 18:11:08 -06:00
Mondo Diaz
f992fc540e Add proactive dependency caching for PyPI packages
When a PyPI package is cached, its dependencies are now automatically
fetched in background threads. This ensures the entire dependency tree
is cached even if pip already has some packages installed locally.

Features:
- Background threads fetch each dependency without blocking the response
- Uses our own proxy endpoint to cache, which recursively caches transitive deps
- Max depth of 10 to prevent infinite loops
- Daemon threads so they don't block process shutdown
2026-01-30 17:45:30 -06:00
Mondo Diaz
044a6c1d27 Fix duplicate dependency constraint causing 500 errors
- Deduplicate dependencies by package name before inserting
- Some packages (like anyio) list the same dep (trio) multiple times with
  different version constraints for different extras
- The unique constraint on (artifact_id, project, package) rejected these
- Also removed debug logging from dependencies.py
2026-01-30 17:43:49 -06:00
Mondo Diaz
62c77dc16d Add detailed debug logging to _resolve_dependency_to_artifact 2026-01-30 17:29:19 -06:00
Mondo Diaz
7c05360eed Add debug logging to resolve_dependencies 2026-01-30 17:21:04 -06:00
Mondo Diaz
76878279e9 Add backfill script for PyPI package dependencies
Script extracts Requires-Dist metadata from cached PyPI packages
and stores them in artifact_dependencies table.

Usage:
  docker exec <container> python -m backend.scripts.backfill_pypi_dependencies
  docker exec <container> python -m backend.scripts.backfill_pypi_dependencies --dry-run
2026-01-30 15:38:45 -06:00
Mondo Diaz
e1b01abf9b Add PEP 440 version constraint matching for dependency resolution
- Parse version constraints like >=1.9, <2.0 using packaging library
- Find the latest version that satisfies the constraint
- Support wildcard (*) to get latest version
- Fall back to exact version and tag matching
2026-01-30 15:34:19 -06:00
Mondo Diaz
d07936b666 Fix ensure file modal z-index when opened from deps modal 2026-01-30 15:32:06 -06:00
Mondo Diaz
47b3eb439d Extract and store dependencies from PyPI packages
- Add functions to parse Requires-Dist metadata from wheel and sdist files
- Store extracted dependencies in artifact_dependencies table
- Fix streaming response for cached artifacts (proper tuple unpacking)
- Fix version uniqueness check to use version string instead of artifact_id
- Skip creating versions for .metadata files
2026-01-30 15:14:52 -06:00
Mondo Diaz
c5f75e4fd6 Add is_system to all ProjectResponse constructions in routes 2026-01-30 13:34:26 -06:00
Mondo Diaz
ff31379649 Fix: ensure existing _pypi project gets is_system=true 2026-01-30 13:33:31 -06:00
Mondo Diaz
424b1e5770 Add is_system field to ProjectResponse schema 2026-01-30 13:11:11 -06:00
Mondo Diaz
7b5b0c78d8 Hide Tags and Latest columns for system projects in package table 2026-01-30 12:55:28 -06:00
Mondo Diaz
924826f07a Improve system project UX and make dependencies a modal
- Hide tag count stat for system projects (show "versions" instead of "artifacts")
- Hide "Latest" tag stat for system projects
- Change "Create/Update Tag" to only show for non-system projects
- Add "View Artifact ID" menu option with modal showing the SHA256 hash
- Move dependencies section to a modal (opened via "View Dependencies" menu)
- Add deps-modal and artifact-id-modal CSS styles
2026-01-30 12:36:40 -06:00
Mondo Diaz
fe6c6c52d2 Fix PyPI proxy UX and package stats calculation
- Fix artifact_count and total_size calculation to use Tags instead of
  Uploads, so PyPI cached packages show their stats correctly
- Fix PackagePage dropdown menu positioning (use fixed position with backdrop)
- Add system project detection for projects starting with "_"
- Show Version as primary column for system projects, hide Tag column
- Hide upload button for system projects (they're cache-only)
- Rename section header to "Versions" for system projects
- Fix test_projects_sort_by_name to exclude system projects from sort comparison
2026-01-30 12:16:05 -06:00
Mondo Diaz
701e11ce83 Hide format filter and column for system projects
System projects like _pypi only contain packages of one format,
so the format filter dropdown and column are redundant.
2026-01-30 11:55:09 -06:00
Mondo Diaz
ff9e02606e Hide Settings and New Package buttons for system projects
System projects should be system-controlled only. Users should not
be able to create packages or change settings on system cache projects.
2026-01-30 11:54:02 -06:00
Mondo Diaz
f3afdd3bbf Improve PyPI proxy and Package page UX
PyPI proxy improvements:
- Set package format to "pypi" instead of "generic"
- Extract version from filename and create PackageVersion record
- Support .whl, .tar.gz, and .zip filename formats

Package page UX overhaul:
- Move upload to header button with modal
- Simplify table: combine Tag/Version, remove Type and Artifact ID columns
- Add row action menu (⋯) with: Copy ID, Ensure File, Create Tag, Dependencies
- Remove cluttered "Download by Artifact ID" and "Create/Update Tag" sections
- Add modals for upload and create tag actions
- Cleaner, more scannable table layout
2026-01-30 11:52:37 -06:00
Mondo Diaz
4b73196664 Show team name instead of individual user in Owner column
Projects owned by teams now display the team name in the Owner column
for better organizational continuity when team members change.
Falls back to created_by if no team is assigned.
2026-01-30 11:25:01 -06:00
Mondo Diaz
7ef66745f1 Add "(coming soon)" label for unsupported upstream source types
Only pypi and generic are currently supported. Other types now show
"(coming soon)" in both the dropdown and the sources table.
2026-01-30 11:03:44 -06:00
Mondo Diaz
2dc7fe5a7b Fix PyPI proxy: use correct storage method and make project public
- Use storage.get_stream(s3_key) instead of non-existent get_artifact_stream()
- Make _pypi project public (is_public=True) so cached packages are visible
2026-01-30 10:59:50 -06:00
Mondo Diaz
534e4b964f Fix Project and Tag model fields in PyPI proxy
Use correct model fields:
- Project: is_public, is_system, created_by (not visibility)
- Tag: add required created_by field
2026-01-30 10:29:25 -06:00
Mondo Diaz
757e43fc34 Fix Artifact model field names in PyPI proxy
Use correct Artifact model fields:
- original_name instead of filename
- Add required created_by and s3_key fields
- Include checksum fields from storage result
2026-01-30 09:58:15 -06:00
Mondo Diaz
d78092de55 Fix PyPI proxy to use correct storage.store() method
The code was calling storage.store_artifact() which doesn't exist.
Changed to use storage.store() which handles content-addressable
storage with automatic deduplication.
2026-01-30 09:41:34 -06:00
Mondo Diaz
0fa991f536 Allow full path in PyPI upstream source URL
Users can now configure the full path including /simple in their
upstream source URL (e.g., https://example.com/api/pypi/repo/simple)
instead of having the code append /simple/ automatically.

This matches pip's --index-url format, making configuration more
intuitive and copy/paste friendly.
2026-01-30 09:24:05 -06:00
Mondo Diaz
00fb2729e4 Fix test_rewrite_relative_links assertion to expect correct URL
The test was checking for the wrong URL pattern. When urljoin resolves
../../packages/ab/cd/... relative to /api/pypi/pypi-remote/simple/requests/,
it correctly produces /api/pypi/pypi-remote/packages/ab/cd/... (not
/api/pypi/packages/...).
2026-01-30 08:51:30 -06:00
Mondo Diaz
8ae4d7a685 Improve PyPI proxy test assertions for all status codes
Tests now verify the correct response for each scenario:
- 200: HTML content-type
- 404: "not found" error message
- 503: "No PyPI upstream sources configured" error message
2026-01-29 19:35:20 -06:00
Mondo Diaz
4b887d1aad Fix PyPI proxy tests to work with or without upstream sources
- Tests now accept 200/404/503 responses since upstream sources may or
  may not be configured in the test environment
- Added upstream_base_url parameter to _rewrite_package_links test
- Added test for relative URL resolution (Artifactory-style URLs)
2026-01-29 19:34:33 -06:00
Mondo Diaz
4dc54ace8a Fix HTTPS scheme detection behind reverse proxy
When behind a reverse proxy that terminates SSL, the server sees HTTP
requests internally. Added _get_base_url() helper that respects the
X-Forwarded-Proto header to generate correct external HTTPS URLs.

This fixes links in the PyPI simple index showing http:// instead of
https:// when accessed via HTTPS through a load balancer.
2026-01-29 18:02:21 -06:00
Mondo Diaz
64bfd3902f Fix relative URL handling in PyPI proxy
Artifactory and other registries may return relative URLs in their
Simple API responses (e.g., ../../packages/...). The proxy now resolves
these to absolute URLs using urljoin() before encoding them in the
upstream parameter.

This fixes package downloads failing when the upstream registry uses
relative URLs in its package index.
2026-01-29 18:01:19 -06:00
Mondo Diaz
bdfed77cb1 Remove dead code from pypi_proxy.py
- Remove unused imports (UpstreamClient, UpstreamClientConfig,
  UpstreamHTTPError, UpstreamConnectionError, UpstreamTimeoutError)
- Simplify matched_source selection logic, removing dead conditional
  that always evaluated to True due to 'or True'
2026-01-29 16:42:53 -06:00
Mondo Diaz
140f6c926a Fix httpx.Timeout configuration in PyPI proxy
httpx.Timeout requires either a default value or all four parameters.
Changed to httpx.Timeout(default, connect=X) format.
2026-01-29 16:40:06 -06:00
Mondo Diaz
dcd405679a Merge branch 'feature/transparent-proxy' into 'main'
Add transparent PyPI proxy and improve upstream sources UI

Closes #108

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!56
2026-01-29 16:12:57 -06:00
Mondo Diaz
97498b2f86 Add transparent PyPI proxy and improve upstream sources UI 2026-01-29 16:12:57 -06:00
Mondo Diaz
e8cf2462b7 Merge branch 'fix/upstream-caching-bugs-2' into 'main'
Simplify cache management UI and improve test status display (#107)

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!55
2026-01-29 14:25:19 -06:00
Mondo Diaz
038ad4ed1b Simplify cache management UI and improve test status display (#107) 2026-01-29 14:25:19 -06:00
Mondo Diaz
858b45d434 Merge branch 'fix/purge-seed-data-user-id' into 'main'
Fix purge_seed_data type mismatch for access_permissions.user_id (#107)

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!54
2026-01-29 13:48:21 -06:00
Mondo Diaz
95470b2bf6 Fix purge_seed_data type mismatch for access_permissions.user_id (#107) 2026-01-29 13:48:21 -06:00
Mondo Diaz
c512d85f9e Merge branch 'fix/upstream-caching-bugs' into 'main'
Remove public internet features and fix upstream source UI (#107)

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!53
2026-01-29 13:26:29 -06:00
Mondo Diaz
82f67539bd Remove public internet features and fix upstream source UI (#107) 2026-01-29 13:26:28 -06:00
Mondo Diaz
e93e7e7021 Merge branch 'feature/proxy-schema' into 'main'
Add upstream caching infrastructure and refactor CI pipeline

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!52
2026-01-29 11:55:15 -06:00
Mondo Diaz
1d51c856b0 Add upstream caching infrastructure and refactor CI pipeline 2026-01-29 11:55:15 -06:00
Mondo Diaz
c92895ffe9 Merge branch 'fix/migration-rollback' into 'main'
Add rollback after failed migration to allow subsequent migrations to run

See merge request esv/bsf/bsf-integration/orchard/orchard-mvp!51
2026-01-28 15:23:51 -06:00